Hierarchy For All Packages

Package Hierarchies:

• magpie,
• magpie.attributes.evaluators,
• magpie.attributes.expanders,
• magpie.attributes.generators,
• magpie.attributes.generators.composition,
• magpie.attributes.generators.crystal,
• magpie.attributes.generators.element,
• magpie.attributes.generators.prototype,
• magpie.attributes.selectors,
• magpie.cluster,
• magpie.csp,
• magpie.csp.diagramdata,
• magpie.data,
• magpie.data.materials,
• magpie.data.materials.util,
• magpie.data.utilities.filters,
• magpie.data.utilities.generators,
• magpie.data.utilities.modifiers,
• magpie.data.utilities.modifiers.duplicates,
• magpie.data.utilities.normalizers,
• magpie.data.utilities.output,
• magpie.data.utilities.splitters,
• magpie.models,
• magpie.models.classification,
• magpie.models.interfaces,
• magpie.models.regression,
• magpie.models.regression.crystal,
• magpie.models.regression.nonlinear,
• magpie.models.utility,
• magpie.optimization.rankers,
• magpie.statistics.performance,
• magpie.statistics.utility,
• magpie.user,
• magpie.user.server,
• magpie.user.server.operations,
• magpie.utility,
• magpie.utility.interfaces,
• magpie.utility.tools

Class Hierarchy

• java.lang.Object
  • magpie.attributes.evaluators.BaseAttributeEvaluator (implements magpie.utility.interfaces.Options)
    • magpie.attributes.evaluators.AreaUnderROCEvaluator
    • magpie.attributes.evaluators.PearsonsCorrelationEvaluator
    • magpie.attributes.evaluators.PolynomialFitEvaluator
    • magpie.attributes.evaluators.SpearmansCorrelationEvaluator
  • magpie.attributes.expanders.BaseAttributeExpander (implements magpie.utility.interfaces.Options, java.io.Serializable)
    • magpie.attributes.expanders.CrossExpander
    • magpie.attributes.expanders.FunctionExpander (implements magpie.utility.interfaces.Citable)
    • magpie.attributes.expanders.PowerExpander
  • magpie.attributes.generators.BaseAttributeGenerator (implements magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options, java.io.Serializable)
    • magpie.attributes.generators.composition.APEAttributeGenerator
    • magpie.attributes.generators.crystal.APRDFAttributeGenerator (implements magpie.utility.interfaces.Citable)
    • magpie.attributes.generators.composition.ChargeDependentAttributeGenerator (implements magpie.utility.interfaces.Citable)
    • magpie.attributes.generators.crystal.ChemicalOrderingAttributeGenerator
    • magpie.attributes.generators.crystal.CoordinationNumberAttributeGenerator
    • magpie.attributes.generators.crystal.CoulombMatrixAttributeGenerator (implements magpie.utility.interfaces.Citable)
    • magpie.attributes.generators.crystal.EffectiveCoordinationNumberAttributeGenerator
    • magpie.attributes.generators.element.ElementalPropertyAttributeGenerator
    • magpie.attributes.generators.composition.ElementalPropertyAttributeGenerator
    • magpie.attributes.generators.composition.ElementFractionAttributeGenerator
    • magpie.attributes.generators.composition.ElementPairPropertyAttributeGenerator
    • magpie.attributes.generators.composition.GCLPAttributeGenerator
    • magpie.attributes.generators.composition.IonicCompoundProximityAttributeGenerator
    • magpie.attributes.generators.composition.IonicityAttributeGenerator (implements magpie.utility.interfaces.Citable)
    • magpie.attributes.generators.crystal.LatticeSimilarityAttributeGenerator
    • magpie.attributes.generators.crystal.LocalPropertyDifferenceAttributeGenerator
      • magpie.attributes.generators.crystal.LocalPropertyVarianceAttributeGenerator
    • magpie.attributes.generators.LookupTableAttributeGenerator
    • magpie.attributes.generators.composition.MeredigAttributeGenerator (implements magpie.utility.interfaces.Citable)
    • magpie.attributes.generators.ModelPredictionAttributeGenerator
    • magpie.attributes.generators.crystal.PackingEfficiencyAttributeGenerator
    • magpie.attributes.generators.crystal.PRDFAttributeGenerator (implements magpie.utility.interfaces.Citable)
    • magpie.attributes.generators.PropertyAsAttributeGenerator
    • magpie.attributes.generators.prototype.SingleSiteAttributeGenerator
      • magpie.attributes.generators.prototype.PairSiteAttributeGenerator
    • magpie.attributes.generators.composition.StoichiometricAttributeGenerator (implements magpie.utility.interfaces.Citable)
    • magpie.attributes.generators.crystal.StructuralHeterogeneityAttributeGenerator
    • magpie.attributes.generators.composition.ValenceShellAttributeGenerator (implements magpie.utility.interfaces.Citable)
    • magpie.attributes.generators.composition.YangOmegaAttributeGenerator (implements magpie.utility.interfaces.Citable)
  • magpie.attributes.selectors.BaseAttributeSelector (implements java.lang.Cloneable, magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options, magpie.utility.interfaces.Printable, java.io.Serializable)
    • magpie.attributes.selectors.BestIndividualSelector
    • magpie.attributes.selectors.ExhaustiveAttributeSelector
    • magpie.attributes.selectors.PythonBasedAttributeSelector
      • magpie.attributes.selectors.LassoAttributeSelector (implements magpie.utility.interfaces.Citable)
      • magpie.attributes.selectors.RandomForestAttributeSelector
    • magpie.attributes.selectors.RegexAttributeSelector
    • magpie.attributes.selectors.RemoveCorrelatedAttributeSelector
    • magpie.attributes.selectors.RemoveDuplicateAttributeSelector
    • magpie.attributes.selectors.RemoveNaNAttributeSelector
    • magpie.attributes.selectors.StagedAttributeSelector (implements magpie.utility.interfaces.Citable)
    • magpie.attributes.selectors.UserSpecifiedAttributeSelector
      • magpie.attributes.selectors.MeredigAttributeSelector
      • magpie.attributes.selectors.UserSpecifiedExcludingAttributeSelector
    • magpie.attributes.selectors.WekaAttributeSelector
  • magpie.cluster.BaseClusterer (implements java.lang.Cloneable, magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options, magpie.utility.interfaces.Printable, java.io.Serializable)
    • magpie.cluster.WekaClusterer
  • magpie.data.utilities.filters.BaseDatasetFilter (implements magpie.utility.interfaces.Options, java.io.Serializable)
    • magpie.data.utilities.filters.AllMetalsFilter
    • magpie.data.utilities.filters.BestInAlloySystemFilter
    • magpie.data.utilities.filters.ClassProbabilityFilter
    • magpie.data.utilities.filters.ClassRangeFilter
    • magpie.data.utilities.filters.ComparisonOperatorFilter
      • magpie.data.utilities.filters.AttributeFilter
        • magpie.data.utilities.filters.PropertyFilter
      • magpie.data.utilities.filters.ClassFilter
    • magpie.data.utilities.filters.CompositionDistanceFilter
    • magpie.data.utilities.filters.CompositionSetDistanceFilter (implements java.lang.Cloneable)
    • magpie.data.utilities.filters.ContainsElementFilter
      • magpie.data.utilities.filters.PhaseDiagramExclusionFilter
    • magpie.data.utilities.filters.EntryRankerFilter
    • magpie.data.utilities.filters.IQROutlierFilter
    • magpie.data.utilities.filters.MultiFilter
    • magpie.data.utilities.filters.PredictionOutlierFilter
    • magpie.data.utilities.filters.PropertyRangeFilter
    • magpie.data.utilities.filters.RegressionErrorFilter
    • magpie.data.utilities.filters.StabilityFilter
    • magpie.data.utilities.filters.ZScoreOutlierFilter
  • magpie.data.utilities.modifiers.BaseDatasetModifier (implements java.lang.Cloneable, magpie.utility.interfaces.Options, java.io.Serializable)
    • magpie.data.utilities.modifiers.AddPropertyModifier
    • magpie.data.utilities.modifiers.duplicates.BaseDuplicateResolver
      • magpie.data.utilities.modifiers.duplicates.AveragingDuplicateResolver
      • magpie.data.utilities.modifiers.duplicates.RankingDuplicateResolver
    • magpie.data.utilities.modifiers.ClassEliminationModifier
    • magpie.data.utilities.modifiers.ClassIntervalModifier
    • magpie.data.utilities.modifiers.CompositionSetDistanceModifier
    • magpie.data.utilities.modifiers.DiscreteToContinuousModifier
    • magpie.data.utilities.modifiers.ErrorSignalModifier
    • magpie.data.utilities.modifiers.HHICalculationModifier
    • magpie.data.utilities.modifiers.NaNToMeanModifier
    • magpie.data.utilities.modifiers.NonZeroClassModifier
    • magpie.data.utilities.modifiers.PartitionToClassModifier
    • magpie.data.utilities.modifiers.SetClassNamesModifier
    • magpie.data.utilities.modifiers.SetPropertyValueModifier
    • magpie.data.utilities.modifiers.StabilityCalculationModifier
    • magpie.data.utilities.modifiers.VolumeToLatticeParamModifier
  • magpie.data.utilities.normalizers.BaseDatasetNormalizer (implements java.lang.Cloneable, magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options, magpie.utility.interfaces.Printable, java.io.Serializable)
    • magpie.data.utilities.normalizers.IndependentVariableNormalizer
      • magpie.data.utilities.normalizers.RescalingNormalizer
      • magpie.data.utilities.normalizers.ZScoreNormalizer
        • magpie.data.utilities.normalizers.SoftmaxNormalizer
    • magpie.data.utilities.normalizers.InverseNormalizer
    • magpie.data.utilities.normalizers.MultiNormalizer
    • magpie.data.utilities.normalizers.RegularSolutionNormalizer
  • magpie.data.utilities.output.BaseDatasetOutput (implements magpie.utility.interfaces.Options)
    • magpie.data.utilities.output.ARFFOutput
    • magpie.data.utilities.output.DelimitedOutput
      • magpie.data.utilities.output.DelimitedClassOutput
    • magpie.data.utilities.output.JSONOutput
    • magpie.data.utilities.output.PropertiesOutput
      • magpie.data.utilities.output.CompositionOutput
    • magpie.data.utilities.output.SimpleOutput
  • magpie.data.utilities.splitters.BaseDatasetSplitter (implements java.lang.Cloneable, magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options, magpie.utility.interfaces.Printable, java.io.Serializable)
    • magpie.data.utilities.splitters.AllMetalsSplitter
      • magpie.data.utilities.splitters.MixedMetalsSplitter
    • magpie.data.utilities.splitters.AttributeIntervalSplitter
    • magpie.data.utilities.splitters.ClustererSplitter
    • magpie.data.utilities.splitters.FilterSplitter
    • magpie.data.utilities.splitters.MeasuredClassSplitter
    • magpie.data.utilities.splitters.NonZeroClassificationSplitter
    • magpie.data.utilities.splitters.ObjectiveFunctionSplitter
    • magpie.data.utilities.splitters.PredictedClassIntervalSplitter
    • magpie.data.utilities.splitters.SingleElementGroupSplitter
      • magpie.data.utilities.splitters.MultipleElementGroupsSplitter
  • magpie.data.BaseEntry (implements java.lang.Cloneable, java.lang.Comparable<T>, java.util.Comparator<T>, java.io.Serializable)
    • magpie.data.MultiPropertyEntry
      • magpie.data.materials.CompositionEntry
        • magpie.data.materials.CrystalStructureEntry
        • magpie.data.materials.PrototypeEntry
      • magpie.data.materials.ElementEntry
  • magpie.data.utilities.generators.BaseEntryGenerator (implements java.lang.Iterable<T>, magpie.utility.interfaces.Options)
    • magpie.data.utilities.generators.AlloyingCompositionEntryGenerator
    • magpie.data.utilities.generators.CombinatorialSubstitutionGenerator
    • magpie.data.utilities.generators.CompositionRangeEntryGenerator
    • magpie.data.utilities.generators.FixedStoichiometryCompositionEntryGenerator
    • magpie.data.utilities.generators.GridBaseEntryGenerator
    • magpie.data.utilities.generators.PhaseDiagramCompositionEntryGenerator
      • magpie.data.utilities.generators.IonicCompoundGenerator
    • magpie.data.utilities.generators.PrototypeEntryGenerator
  • magpie.optimization.rankers.BaseEntryRanker (implements java.lang.Cloneable, magpie.utility.interfaces.Options)
    • magpie.optimization.rankers.ClassProbabilityRanker
    • magpie.optimization.rankers.CompositionDistanceRanker
    • magpie.optimization.rankers.MultiObjectiveEntryRanker
      • magpie.optimization.rankers.AdaptiveScalarizingEntryRanker
      • magpie.optimization.rankers.PropertyFormulaRanker
    • magpie.optimization.rankers.PropertyRanker
    • magpie.optimization.rankers.SimpleEntryRanker
    • magpie.optimization.rankers.TargetEntryRanker
  • magpie.models.BaseModel (implements magpie.utility.interfaces.Citable, java.lang.Cloneable, magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options, magpie.utility.interfaces.Printable, magpie.utility.interfaces.Savable, java.io.Serializable)
    • magpie.models.classification.BaseClassifier (implements magpie.models.classification.AbstractClassifier)
      • magpie.models.classification.CumulantExpansionClassifier (implements magpie.utility.interfaces.Savable)
      • magpie.models.classification.ScikitLearnClassifier (implements magpie.models.interfaces.ExternalModel)
      • magpie.models.classification.WekaClassifier (implements magpie.utility.interfaces.Citable, magpie.models.interfaces.WekaModel)
    • magpie.models.regression.BaseRegression (implements magpie.models.regression.AbstractRegressionModel)
      • magpie.models.regression.AbstractNonlinearRegression
        • magpie.models.regression.AbstractParsedNonlinearRegression
          • magpie.models.regression.NonlinearRegressionExpr
        • magpie.models.regression.nonlinear.SimpleLinearModelExample
      • magpie.models.regression.ClassificationRegression
      • magpie.models.regression.CompositeRegression (implements magpie.models.interfaces.MultiModel)
      • magpie.models.regression.LASSORegression
      • magpie.models.regression.LinearCorrectedRegression
      • magpie.models.regression.MetallurgicalHeuristicRegression
      • magpie.models.regression.MixingRuleRegression
      • magpie.models.regression.MultiObjectiveRegression
        • magpie.models.regression.MultiPropertyRegression
      • magpie.models.regression.PolynomialRegression
      • magpie.models.regression.RandomGuessRegression
      • magpie.models.regression.ScikitLearnRegression (implements magpie.models.interfaces.ExternalModel)
      • magpie.models.regression.SingleGuessRegression
        • magpie.models.regression.GuessMeanRegression
      • magpie.models.regression.StagedRegression (implements magpie.models.regression.AbstractRegressionModel, magpie.models.interfaces.MultiModel)
      • magpie.models.regression.crystal.StructureKRRBasedRegression
        • magpie.models.regression.crystal.CoulombEwaldMatrixRegression
        • magpie.models.regression.crystal.CoulombSineMatrixRegression
        • magpie.models.regression.crystal.PRDFRegression
      • magpie.models.regression.WekaRegression (implements magpie.models.interfaces.WekaModel)
    • magpie.models.SplitModel (implements magpie.models.interfaces.MultiModel)
      • magpie.models.classification.SplitClassifier (implements magpie.models.classification.AbstractClassifier)
      • magpie.models.regression.SplitRegression (implements magpie.models.regression.AbstractRegressionModel)
  • magpie.statistics.performance.BaseStatistics (implements java.lang.Cloneable, magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options, magpie.utility.interfaces.Printable, magpie.utility.interfaces.Savable, java.io.Serializable)
    • magpie.statistics.performance.ClassificationStatistics
    • magpie.statistics.performance.RegressionStatistics
      • magpie.statistics.performance.TargetRegressionStatistics
  • magpie.utility.tools.BatchAttributeGenerator (implements magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options)
  • magpie.utility.tools.BatchModelEvaluator (implements magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options)
  • magpie.utility.CartesianSumGenerator<Type> (implements java.lang.Iterable<T>)
  • magpie.utility.interfaces.Citation
  • magpie.statistics.performance.ClustererStatistics (implements magpie.utility.interfaces.Printable, java.io.Serializable)
  • magpie.user.CommandHandler
  • magpie.user.server.CORSFilter (implements javax.ws.rs.container.ContainerResponseFilter)
  • magpie.csp.CSPEngine (implements magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options, magpie.utility.interfaces.Printable)
    • magpie.csp.CompositionBasedCSPEngine
    • magpie.csp.DMSPEngine
  • magpie.csp.CSPPerformanceStats (implements magpie.utility.interfaces.Printable)
  • magpie.data.Dataset (implements magpie.utility.interfaces.Citable, java.lang.Cloneable, magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options, magpie.utility.interfaces.Printable, magpie.utility.interfaces.Savable, java.io.Serializable)
    • magpie.data.MultiPropertyDataset
      • magpie.data.materials.CompositionDataset
        • magpie.data.materials.CrystalStructureDataset
        • magpie.data.materials.PrototypeDataset
      • magpie.data.materials.ElementDataset
  • magpie.utility.DistinctPermutationGenerator
  • magpie.utility.EqualSumCombinations (implements java.lang.Iterable<T>)
  • magpie.models.utility.ExternalModelUtility
  • magpie.data.materials.util.GCLPCalculator (implements java.io.Serializable)
  • magpie.user.InputFileParser
  • magpie.utility.tools.IonicCompoundFinder (implements magpie.utility.interfaces.Commandable)
  • magpie.data.materials.util.LookupData
  • magpie.Magpie
  • magpie.utility.MathUtils
  • magpie.user.server.operations.ModelOperator
  • magpie.user.server.ModelPackage
  • magpie.user.server.operations.ModelQueryHandler
  • magpie.models.utility.MultiModelUtility
  • magpie.utility.NDGridIterator (implements java.util.Iterator<E>)
  • magpie.utility.tools.OxidationStateGuesser (implements magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options, java.io.Serializable)
  • magpie.utility.ParsedFunction (implements org.apache.commons.math3.analysis.MultivariateFunction, java.io.Serializable)
  • magpie.utility.tools.PhaseDiagramExclusionValidator (implements magpie.utility.interfaces.Commandable, magpie.utility.interfaces.Options, magpie.utility.interfaces.Printable, magpie.utility.interfaces.Savable)
  • magpie.csp.diagramdata.PhaseDiagramStatistics (implements java.io.Serializable)
    • magpie.csp.diagramdata.OnTheFlyPhaseDiagramStatistics
  • magpie.data.materials.util.PropertyLists
  • magpie.data.materials.util.PrototypeSiteInformation (implements java.lang.Cloneable, java.io.Serializable)
  • magpie.statistics.utility.RobustRegressionUtility
  • magpie.user.server.operations.SearchRunner
  • magpie.user.server.operations.ServerInformationGetter
  • magpie.user.server.ServerLauncher
  • magpie.user.server.ServerUtilityOperations
  • magpie.utility.UtilityOperations
  • magpie.utility.WekaUtility
  • magpie.user.Workspace

Interface Hierarchy

• magpie.models.classification.AbstractClassifier
• magpie.models.regression.AbstractRegressionModel
• java.lang.AutoCloseable
  • magpie.models.interfaces.ExternalModel
• magpie.utility.interfaces.Citable
• magpie.utility.interfaces.Commandable
• magpie.models.interfaces.MultiModel
• magpie.utility.interfaces.Options
• magpie.utility.interfaces.Printable
• magpie.utility.interfaces.Savable
• magpie.models.interfaces.WekaModel

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • magpie.data.utilities.generators.CombinatorialSubstitutionGenerator.EnumerationType
    • magpie.data.utilities.output.CompositionOutput.ElementSelectionMethod
    • magpie.attributes.selectors.ExhaustiveAttributeSelector.EvaluationMethod
    • magpie.attributes.selectors.RemoveCorrelatedAttributeSelector.CorrelationMeasure